USC-OGP 2-DE database Two-dimensional polyacrylamide gel electrophoresis database

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Searching in 'USC-OGP 2-DE database' for entry matching: P08670 USC-OGP 2-DE database:  P08670 P08670 General information about the entry View entry in simple text format Entry name VIME_HUMAN Primary accession number P08670 Secondary accession number(s) Q8N850 Q96ML2 integrated into USC-OGP 2-DE database on  January 17, 2017 (release 1) 2D Annotations were last modified on January 17, 2017 (version 1) General Annotations were last modified on  April 5, 2017 (version 2) Name and origin of the protein Description RecName: Full=Vimentin;. Gene name Name=VIM Annotated species Homo sapiens (Human) [TaxID: 9606] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. References [1]   2D GEL CHARACTERIZATION Author 1., Author 2. Submitted (Mar-2011) to Current 2D PAGE maps for identified proteins How to interpret a protein PLATELET_4-5 {PLATELET 4-5} Homo sapiens (Human)   map experimental info   PLATELET_4-5 MAP LOCATIONS: SPOT OGP-0194: pI=4.95; Mw=25286 UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10} Homo sapiens (Human)   map experimental info   UVEAL_MELANOMA_3-10 MAP LOCATIONS: SPOT OGP-1146: pI=5.35; Mw=57061 SPOT OGP-1156: pI=5.57; Mw=52478 SPOT OGP-1160: pI=5.05; Mw=49904 SPOT OGP-1171: pI=4.97; Mw=46576 SPOT OGP-1173: pI=5.91; Mw=45157 SPOT OGP-1175: pI=6.62; Mw=45030 SPOT OGP-1179: pI=5.29; Mw=44651 SPOT OGP-1180: pI=4.73; Mw=44526 SPOT OGP-1181: pI=5.40; Mw=44276 SPOT OGP-1189: pI=5.12; Mw=42209 SPOT OGP-1239: pI=6.05; Mw=32675 Cross-references UniProtKB/Swiss-Prot P08670; VIME_HUMAN. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 0.0 Entry name VIME_HUMAN Primary accession number P08670 Secondary accession number(s) B0YJC2 D3DRU4 Q15867 Q15868 Q15869 Q548L2 Q6LER9 Q8N850 Q96ML2 Q9NTM3 Sequence was last modified on  January 23, 2007 (version 4) Annotations were last modified on  March 15, 2017 (version 219) Name and origin of the protein Description RecName: Full=Vimentin; Gene name Name=VIM Encoded on Name=VIM Keywords 3D-structure; Acetylation; Cataract; Coiled coil; Complete proteome; Cytoplasm; Direct protein sequencing; Disease mutation; Glycoprotein; Host-virus interaction; Intermediate filament; Isopeptide bond; Nitration; Phosphoprotein; Reference proteome; S-nitrosylation; Ubl conjugation. Copyright Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL M14144; AAA61279.1; -; Genomic_DNA EMBL X56134; CAA39600.1; -; mRNA EMBL AF328728; AAN09720.1; -; mRNA EMBL Z19554; CAA79613.2; -; mRNA EMBL AK056766; BAB71275.1; ALT_SEQ; mRNA EMBL AK097336; BAC05002.1; -; mRNA EMBL AK290643; BAF83332.1; -; mRNA EMBL CR407690; CAG28618.1; -; mRNA EMBL AK222507; BAD96227.1; -; mRNA EMBL AK222602; BAD96322.1; -; mRNA EMBL EF445046; ACA06101.1; -; Genomic_DNA EMBL EF445046; ACA06102.1; -; Genomic_DNA EMBL AL133415; CAB87963.1; -; Genomic_DNA EMBL CH471072; EAW86215.1; -; Genomic_DNA EMBL CH471072; EAW86216.1; -; Genomic_DNA EMBL BC000163; AAH00163.2; -; mRNA EMBL BC030573; AAH30573.1; -; mRNA EMBL BC066956; AAH66956.1; -; mRNA EMBL X16478; CAA34499.1; -; mRNA EMBL M18895; AAA61281.2; -; Genomic_DNA EMBL M18888; AAA61281.2; JOINED; Genomic_DNA EMBL M18889; AAA61281.2; JOINED; Genomic_DNA EMBL M18890; AAA61281.2; JOINED; Genomic_DNA EMBL M18891; AAA61281.2; JOINED; Genomic_DNA EMBL M18892; AAA61281.2; JOINED; Genomic_DNA EMBL M18893; AAA61281.2; JOINED; Genomic_DNA EMBL M18894; AAA61281.2; JOINED; Genomic_DNA EMBL M25246; AAA61282.1; -; mRNA CCDS CCDS7120.1; -; . PIR S13115; A25074; . RefSeq NP_003371.2; NM_003380.3; . RefSeq XP_006717563.1; XM_006717500.1; . UniGene Hs.455493; -; . UniGene Hs.691131; -; . PDB 1GK4; X-ray; 2.30 A; A/B/C/D/E/F=328-411 PDB 1GK6; X-ray; 1.90 A; A/B=385-412 PDB 1GK7; X-ray; 1.40 A; A=102-138 PDB 3G1E; X-ray; 1.83 A; A/B=102-138 PDB 3KLT; X-ray; 2.70 A; A/B/C/D=263-334 PDB 3S4R; X-ray; 2.45 A; A/B=99-189 PDB 3SSU; X-ray; 2.60 A; A/B=99-189 PDB 3SWK; X-ray; 1.70 A; A/B=153-238 PDB 3TRT; X-ray; 2.30 A; A/B=261-335 PDB 3UF1; X-ray; 2.81 A; A/B/C/D=144-251 PDB 4MCY; X-ray; 2.30 A; C=66-78 PDB 4MCZ; X-ray; 2.41 A; C=59-71 PDB 4MD0; X-ray; 2.19 A; C=59-71 PDB 4MD5; X-ray; 1.65 A; C=66-78 PDB 4MDI; X-ray; 2.00 A; C=66-78 PDB 4MDJ; X-ray; 1.70 A; C=66-78 PDB 4YPC; X-ray; 1.44 A; A=161-243 PDB 4YV3; X-ray; 2.00 A; A/B/C=161-238 PDBsum 1GK4; -; . PDBsum 1GK6; -; . PDBsum 1GK7; -; . PDBsum 3G1E; -; . PDBsum 3KLT; -; . PDBsum 3S4R; -; . PDBsum 3SSU; -; . PDBsum 3SWK; -; . PDBsum 3TRT; -; . PDBsum 3UF1; -; . PDBsum 4MCY; -; . PDBsum 4MCZ; -; . PDBsum 4MD0; -; . PDBsum 4MD5; -; . PDBsum 4MDI; -; . PDBsum 4MDJ; -; . PDBsum 4YPC; -; . PDBsum 4YV3; -; . ProteinModelPortal P08670; -; . SMR P08670; -; . BioGrid 113272; 246; . DIP DIP-32507N; -; . IntAct P08670; 198; . MINT MINT-118802; -; . STRING 9606.ENSP00000224237; -; . iPTMnet P08670; -; . PhosphoSitePlus P08670; -; . SwissPalm P08670; -; . BioMuta VIM; -; . DMDM 55977767; -; . DOSAC-COBS-2DPAGE P08670; -; . OGP P08670; -; . REPRODUCTION-2DPAGE IPI00418471; -; . REPRODUCTION-2DPAGE P08670; -; . SWISS-2DPAGE P08670; -; . UCD-2DPAGE P08670; -; . EPD P08670; -; . PaxDb P08670; -; . PeptideAtlas P08670; -; . PRIDE P08670; -; . TopDownProteomics P08670; -; . DNASU 7431; -; . Ensembl ENST00000224237; ENSP00000224237; ENSG00000026025; . Ensembl ENST00000544301; ENSP00000446007; ENSG00000026025; . GeneID 7431; -; . KEGG hsa:7431; -; . CTD 7431; -; . DisGeNET 7431; -; . GeneCards VIM; -; . H-InvDB HIX0035657; -; . HGNC HGNC:12692; VIM; . HPA CAB000080; -; . HPA CAB058687; -; . HPA HPA001762; -; . MalaCards VIM; -; . MIM 116300; phenotype; . MIM 193060; gene; . neXtProt NX_P08670; -; . OpenTargets ENSG00000026025; -; . Orphanet 98984; Pulverulent cataract; . PharmGKB PA37311; -; . eggNOG ENOG410IFZ1; Eukaryota; . eggNOG ENOG410XRBS; LUCA; . GeneTree ENSGT00830000128228; -; . HOVERGEN HBG013015; -; . InParanoid P08670; -; . KO K07606; -; . OMA DVDNACL; -; . OrthoDB EOG091G12MK; -; . PhylomeDB P08670; -; . TreeFam TF330122; -; . Reactome R-HSA-264870; Caspase-mediated cleavage of cytoskeletal proteins; . Reactome R-HSA-390522; Striated Muscle Contraction; . Reactome R-HSA-6785807; Interleukin-4 and 13 signaling; . SIGNOR P08670; -; . ChiTaRS VIM; human; . EvolutionaryTrace P08670; -; . GeneWiki Vimentin; -; . GenomeRNAi 7431; -; . PMAP-CutDB P08670; -; . PRO PR:P08670; -; . Proteomes UP000005640; Chromosome 10; . Bgee ENSG00000026025; -; . ExpressionAtlas P08670; baseline and differential; . Genevisible P08670; HS; . GO GO:0031252; C:cell leading edge; IEA:Ensembl; . GO GO:0005737; C:cytoplasm; IDA:UniProtKB; . GO GO:0005856; C:cytoskeleton; TAS:UniProtKB; . GO GO:0005829; C:cytosol; IDA:UniProtKB; . GO GO:0070062; C:extracellular exosome; IDA:UniProtKB; . GO GO:0031012; C:extracellular matrix; IDA:BHF-UCL; . GO GO:0005925; C:focal adhesion; IDA:UniProtKB; . GO GO:0005882; C:intermediate filament; IDA:UniProtKB; . GO GO:0043005; C:neuron projection; IEA:Ensembl; . GO GO:0005777; C:peroxisome; IDA:UniProtKB; . GO GO:0005886; C:plasma membrane; IEA:Ensembl; . GO GO:0003725; F:double-stranded RNA binding; IDA:MGI; . GO GO:0001948; F:glycoprotein binding; IPI:UniProtKB; . GO GO:0042802; F:identical protein binding; IPI:IntAct; . GO GO:1990254; F:keratin filament binding; IPI:AgBase; . GO GO:0008022; F:protein C-terminus binding; IPI:UniProtKB; . GO GO:0097110; F:scaffold protein binding; IPI:BHF-UCL; . GO GO:0005200; F:structural constituent of cytoskeleton; IDA:UniProtKB; . GO GO:0005212; F:structural constituent of eye lens; IEA:Ensembl; . GO GO:0014002; P:astrocyte development; IEA:Ensembl; . GO GO:0060020; P:Bergmann glial cell differentiation; IEA:Ensembl; . GO GO:0045109; P:intermediate filament organization; IEA:Ensembl; . GO GO:0070307; P:lens fiber cell development; IEA:Ensembl; . GO GO:0006928; P:movement of cell or subcellular component; TAS:UniProtKB; . GO GO:0030049; P:muscle filament sliding; TAS:Reactome; . GO GO:0010977; P:negative regulation of neuron projection development; IEA:Ensembl; . GO GO:0010628; P:positive regulation of gene expression; IEA:Ensembl; . GO GO:0060395; P:SMAD protein signal transduction; IEA:Ensembl; . GO GO:0016032; P:viral process; IEA:UniProtKB-KW; . InterPro IPR001664; IF; . InterPro IPR006821; Intermed_filament_DNA-bd; . InterPro IPR018039; Intermediate_filament_CS; . InterPro IPR027699; Vimentin; . PANTHER PTHR23239; PTHR23239; 1; . PANTHER PTHR23239:SF258; PTHR23239:SF258; 1; . Pfam PF00038; Filament; 1; . Pfam PF04732; Filament_head; 1; . SMART SM01391; Filament; 1; . PROSITE PS00226; IF; 1; .

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